Life Science News

Automatic cells counting on z-slices with multiple markers

We offer very fast segmentation and classification of multiple, up to 10, markers/layers per field. As a result, we trace each object through z-slices. While in 3D reconstruction we apply the model to count the cells. Each and every additional marker ( layer/ filter) image, of the same field, helps us in the identification of […]

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Mixed-effects model

We offer statistical analyses for output data extracted from our image analysis. We deliver tables, graphs, and plots based on appropriate statistical models, even for the very complex structure data. For example, we provide solutions based on general mixed-effect models. These are appropriate if your data has many independent and dependent variables plus control with variations […]

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Track cells on 2D/3D

Do you trace your cells on 2D/3D – z-stacks? We use a smart structure classification on each z-stack layer and reconstruct the 3D appearance. It’s very fast and well-trained (machine learning). We have incredibly precise counting and tracing methods for structures sitting on top of each other!

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Sholl analysis

Automatic Sholl analysis of individual neurons. Segmentation and classification of each neuron enable us to distinguish Sholl circle cuts of one neuron to count signals from another one in the range. Another example of the Sholl analysis with automatic segmentation and classification on pyramidal neurons

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We offer service for custom automatic segmentation and classification of neurons. Calculating different branching schemes; full skeleton, the perimeter of contours describing neuron, fitt soma body size, the position of each endpoint, nods, branching points, individual lengths of branches, Sholl analysis, and many other morphological measurements.

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Time lapse

We offer a service to analyze time-lapse on your growing samples with the growing/de-growing algorithm. We can measure each pixel your sample moves, grows or de-grows! Fully automatic after the training ( machine learning).

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You would have to:

– contact us:‬
-> Leave short instructions ( about  what do you want to measure from images/videos  )

– send us representative, but short image/video material

We will:

– build a custom protocol for your image/video analysis needs

– send you back DEMO materials :

  • with the short explanantion